PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g14280.3.p
Common NameBRADI_5g14280, LOC100838351
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family DBB
Protein Properties Length: 268aa    MW: 28284.8 Da    PI: 5.7636
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g14280.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.61e-07446541
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                       C+ +e + ++  C  ++  lC+ C +++H        H++ p
  Bradi5g14280.3.p  4 QCDACEGEAATVVCCADEAALCARCDVQIHAAnklagkHQRLP 46
                      6*****************************6678888898877 PP

2zf-B_box31.34.3e-1058101238
          zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38 
                        +++C+ +++k++  fC +++ l+C+dC l++H +       H+
  Bradi5g14280.3.p  58 PAPRCDVCQDKPAFVFCVEDRALFCADCDLSIHVQgalsgnhHR 101
                       5799*****************************55577777555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.182147IPR000315B-box-type zinc finger
CDDcd000211.68E-6347No hitNo description
PfamPF006436.8E-6447IPR000315B-box-type zinc finger
SMARTSM003368.6E-10447IPR000315B-box-type zinc finger
PROSITE profilePS501199.08657105IPR000315B-box-type zinc finger
SMARTSM003366.6E-1257104IPR000315B-box-type zinc finger
PfamPF006431.0E-75898IPR000315B-box-type zinc finger
CDDcd000213.32E-860103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MRIQCDACEG EAATVVCCAD EAALCARCDV QIHAANKLAG KHQRLPLHHD SPSTRSSPAP  60
RCDVCQDKPA FVFCVEDRAL FCADCDLSIH VQGALSGNHH RFLATGIRVG FAFTTVCSTH  120
AGERRPRAAP SKPPPAVVPA PAPAAAPQEV PSSPAYLSPS GWAVEDLLQF SDYESSGDKK  180
GSTSPLGFKE LEWFADIDGL FHHDSPLAPA TKGVSRTAAA EVPELFASPQ PAGNAGFYKA  240
AGARPSKKAR VELPDDDEDY LIVPDLG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580039.10.0PREDICTED: B-box zinc finger protein 24-like
TrEMBLI1IZ620.0I1IZ62_BRADI; Uncharacterized protein
STRINGBRADI5G14280.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32023368
Representative plantOGRP53971020
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.14e-64DBB family protein